On 10/05/12 03:12, Arto Pulk wrote:
> Hi,
>
> I'm trying to use latest coot-0.7 (4149) and do "Real-Space" refinement,
> but after refinement the RNA (ribosomal RNA) sugar-phosphate backbone is
> broke, all the individual RNA residues remain as monomers. With 0.62
> version of coot there was no problem to get RNA residues back to
> polynucleotide form, and you were able to anneal the broken residues by
> "Regularize Zone". Is there problem with monomer library, as I got
> restraints for RNA residues from "Get monomer" for Ar, Gr, Cr, and Ur or
> other reason?
>
>
0.7 (and 0.7-pre) should work with canonical base names - i.e. G,A,U,C.
The capitalized names were created to match with refmac library names -
that is no longer needed. Or should not be. I don't recall now what
happens if you use the old names - possibly Bad Things :-/
Paul.
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