Hi Markus
I use ccpn analysis with ucsf format spectra. I don't do anything special, I just process my spectra using topspin and then convert the resultant 3rrr to ucsf using the standard bruk2ucsf program.
As with most things there is an element of trial and error, I guess as Wayne says it depends on the spectra you are working with in the first place. In my experience the ucsf format works better than bruker for 'standard' 3d spectra associated with protein structure determination.
Best wishes
Marie
NMR Centre
Biological Sciences
University of Liverpool
Crown Street
Liverpool
L697ZB
0151 795 4398
________________________________________
From: CcpNmr software mailing list [[log in to unmask]] on behalf of Markus Heller [[log in to unmask]]
Sent: Monday, May 28, 2012 3:32 PM
To: [log in to unmask]
Subject: Re: ucsf or 3rrr
Hi Marie,
Could you please explain what works better? That would be great...
Thanks
Markus
--
Markus Heller, Ph.D.
Scientist, NMR
Centre for Drug Research and Development (CDRD)
364--2259 Lower Mall
Vancouver, B.C.
Canada V6T 1Z4
p: 604 221 7750 ext 122
f: 604 221 7753
www.cdrd.ca
On 2012-05-28, at 1:23 AM, "Phelan, Marie" <[log in to unmask]> wrote:
> Hi Markus
>
> For some unknown reason I find ucsf works a lot better with analysis than 3rrr format, so if you've got a choice that's what I would work with.
>
> Best wishes
>
> Marie
>
> NMR Centre
> Biological Sciences
> University of Liverpool
> Crown Street
> Liverpool
> L697ZB
> 0151 795 4398
> ________________________________________
> From: CcpNmr software mailing list [[log in to unmask]] on behalf of Wayne Boucher [[log in to unmask]]
> Sent: Monday, May 28, 2012 8:00 AM
> To: [log in to unmask]
> Subject: Re: ucsf or 3rrr
>
> Hello,
>
> They are both blocked data formats which means they both ought to be
> equally ok for Analysis. (And I've never converted one to the other but I
> imagine whatever the conversion process is used is unlikely to change the
> actual block size.)
>
> Regards, Wayne
>
> On Mon, 28 May 2012, Markus Heller wrote:
>
>> Hello all,
>> Sparky user here, but I have decided to give CcpNmr Analysis a try for my next assignment
>> project, since I'm pretty impressed with its capabilities.
>>
>> What file format for the NMR data would you recommend and why? My top two options are Bruker's
>> 3rrr and sparky's ucsf. I've pretty much never used nmrpipe, which eliminates a bunch of
>> options.
>>
>> So, if you had to decided between 3rrr and ucsf, what would you pick and why?
>>
>> Thanks and Cheers
>> Markus
>>
>>
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