Dear all,
I am trying to accomplish a normalization of MR-images with a script,
using the SPM2-Version of spm_normalise. Unfortunately the 'normalized'
image does not match what I was expecting, after transforming the image
with spm_write_sn, but looks gravely distorted (see attached image). The
code I've used is approximately like the following:
mri_template = spm_vol(fullfile(cd,'external','spm2','templates','T1.mnc'));
spm_normalise(mri_template,mri_source,deformation_file);
spm_write_sn(mri_source, deformation_file);
I would appreciate very much, if someone has got any clue what went wrong.
Tanks in advance,
Paul
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