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GRIDPP-STORAGE  April 2012

GRIDPP-STORAGE April 2012

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Subject:

Re: Debugging Biomed at Cambridge: Round Two

From:

Santanu Das <[log in to unmask]>

Reply-To:

Santanu Das <[log in to unmask]>

Date:

Tue, 17 Apr 2012 10:25:13 +0100

Content-Type:

multipart/mixed

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text/plain (29 lines) , site-info_SL5x.def (314 lines)

Hi Sam,

Please find my site-info.def attached and I haven't modified any YAIM 
config files for the SE. Is there other file(s) you may want to have a look?

Cheers,
Santanu



On 14/03/2012 10:21, Sam Skipsey wrote:
> So, now that Santanu's DPM is bleeding-edge updated, with everything 
> new except the database, we should look at the anomalous biomed 
> support again.
>
> If the DPM is still doing that, then there are relatively few places 
> that can be the source of conflicting information; either YAIM 
> scripts, or the databases (I assume that the install was onto fresh 
> hardware, so config files weren't recreated).
>
> I believe you said you'd deleted all traces of biomed from your DPM 
> database, Santanu? I don't suppose you could post a (suitably edited 
> to remove passwords) copy of your site-info.def (and node/service 
> specific config files for YAIM)?
>
> Sam




################################################################# # # # site-info.def :: gLite-yaim-4.0.x (SL5) # # =========================================================== # # SITE CONFIGURATION :: Local node at HEP # # Cavendish Laboratory, Cambridge # # Last updated: 12/11/2010 # # # ############################ o0()0o ############################# ########################## # YAIM related variables # ########################## YAIM_VERSION=`rpm -qa | grep yaim | grep .-[0-9] | sed -e 's/\(.*\).*/\1/g' -e '\,^, s/[a-zA-Z].*-yaim-core-//'` # Debug variable [Possible values: NONE, ABORT, ERROR, WARNING, INFO, DEBUG] YAIM_LOGGING_LEVEL=WARNING # Repository settings REPOSITORY_TYPE="yum" ################################### # General configuration variables # ################################### CONF_DIR=/post-config/Script/source/config_dir INSTALL_ROOT=/opt # INSTALL_ROOT should set correctly MY_DOMAIN=hep.phy.cam.ac.uk # These variables tell YAIM where to find additional configuration files. WN_LIST=${CONF_DIR}/wn-list.conf WN_HOST=`hostname -s` #USERS_CONF=${CONF_DIR}/users.conf if [ "$WN_HOST" == "farm001" ]; then    USERS_CONF=${CONF_DIR}/users.SGM.conf else    USERS_CONF=${CONF_DIR}/users.new2.conf fi GROUPS_CONF=${CONF_DIR}/groups.conf FUNCTIONS_DIR=/opt/glite/yaim/functions # Set this to "yes" if your site provides an X509toKERBEROS Authentication Server # Only for sites with Experiment Software Area under AFS GSSKLOG=no #GSSKLOG_SERVER=my-gssklog.$MY_DOMAIN OUTPUT_STORAGE=/tmp/jobOutput # JAVA LOC: You will probably need to change these two too #JAVA_VER=`rpm -qa | grep jdk-[0-9] | sed -e 's/\(.*\)-[0-9a-z].*/\1/g' -e 's/\(.*\)-/jdk/g'` ##JAVA_LOCATION="/usr/java/${JAVA_VER}" JAVA_LOCATION="/usr/bin/java" # Set this to '/dev/null' or some other dir if you want # to turn off yaim installation of cron jobs CRON_DIR=/etc/cron.d # Set this to your prefered and firewall allowed port range GLOBUS_TCP_PORT_RANGE="20000,25000" # MySQL password (make sure that this file cannot be read by any grid job) MYSQL_PASSWORD="_xxxxx_" # Site-wide settings SITE_DESC="University of Cambridge, Cavendish Lab" SITE_EMAIL=lcg-admin@$MY_DOMAIN SITE_SUPPORT_EMAIL=$SITE_EMAIL SITE_SECURITY_EMAIL=$SITE_EMAIL SITE_NAME=UKI-SOUTHGRID-CAM-HEP SITE_LOC="Cambridge, UK" SITE_LAT=52.208 SITE_LONG=0.092782 SITE_WEB="http://serv01.hep.phy.cam.ac.uk:8880" SITE_OTHER_GRID="EGI|WLCG|SOUTHGRID|GRIDPP" SITE_OTHER_EGI_ROC="NGI_UK" SITE_OTHER_EGEE_SERVICE="prod" SITE_OTHER_WLCG_TIER=2 #SITE_HTTP_PROXY="myproxy.my.domain" ############################## # Common node type variables # ############################## CE_HOST=serv07.$MY_DOMAIN CE2_HOST=serv03.$MY_DOMAIN SE_HOST=serv02.$MY_DOMAIN # actually removed now --> see CLASSIC_HOST, DPM_HOST below RB_HOST="'lcgrb01.gridpp.rl.ac.uk' 'lcgrb02.gridpp.rl.ac.uk'" WMS_HOST=lcgwms01.gridpp.rl.ac.uk # my-wms.$MY_DOMAIN PX_HOST=lcgrbp01.gridpp.rl.ac.uk BDII_HOST=lcg-bdii.gridpp.ac.uk #BDII_HOST=lcgbdii.gridpp.rl.ac.uk MON_HOST=vserv01.$MY_DOMAIN REG_HOST=lcgic01.gridpp.rl.ac.uk ################################# # VOBOX configuration variables # ################################# #VOBOX_HOST=$CE_HOST #VOBOX_PORT=1975 ############################## # CE configuration variables # ############################## # Architecture and enviroment specific settings CE_CPU_MODEL=Xeon CE_CPU_VENDOR=GenuineIntel CE_CPU_SPEED=2660 CE_MINPHYSMEM=2048 CE_MINVIRTMEM=2048 CE_SMPSIZE=2 # New HEPSPEC06 values #[static file: /opt/glite/etc/gip/ldif/static-file-Cluster.ldif] CE_SI00=2180 CE_SF00=898 CE_PHYSCPU=55 CE_LOGCPU=$[CE_PHYSCPU*4] CE_CAPABILITY="CPUScalingReferenceSI00=2013" CE_OTHERDESCR="Cores=4,Benchmark=8.72-HEP-SPEC06" #CE_OS=`lsb_release -i | cut -f2` #CE_OS_RELEASE=`lsb_release -r | cut -f2` #CE_OS_VERSION=`lsb_release -c | cut -f2` CE_OS=ScientificSL CE_OS_RELEASE=5.4 CE_OS_VERSION="Boron" CE_OS_ARCH=`uname -m` CE_OUTBOUNDIP=TRUE CE_INBOUNDIP=FALSE CE_RUNTIMEENV="     LCG-2     LCG-2_1_0     LCG-2_1_1     LCG-2_2_0     LCG-2_3_0     LCG-2_3_1     LCG-2_4_0     LCG-2_5_0     LCG-2_6_0     LCG-2_7_0     GLITE-3_0_0     GLITE-3_1_0     R-GMA     LCG-CE " # Set this if your WNs have a shared directory for temporary storage #CE_DATADIR="" ################################### # FTS configuration variables # ################################### FTS_HOST=lcgfts.gridpp.rl.ac.uk FTS_SERVER_URL="https://lcgfts.gridpp.rl.ac.uk:8443/glite-data-transfer-fts/services/FileTransfer" APEL_DB_USER="condorr" APEL_DB_PASSWORD="_xxxxx_" # GRID_TRUSTED_BROKERS: DNs of services (RBs) allowed to renew/retrives # credentials from/at the myproxy server. Put single quotes around each trusted DN !!! #GRID_TRUSTED_BROKERS="'broker one' 'broker two'" # The RB now uses the DLI by default; set VOs here which should use RLS #RB_RLS="" # "atlas cms" # Space separated list of ldap servers in edg-mkgridmap.conf which authenticate users. GRIDMAP_AUTH="ldap://lcg-registrar.cern.ch/ou=users,o=registrar,dc=lcg,dc=org" #GRIDICE_SERVER_HOST=$MON_HOST # usually run on the MON node GRIDICE_SERVER_HOST=None APEL_PUBLISH_USER_DN=no GIN_BDII=yes ######################################### # Jobmanager configuration variables # ######################################### BATCH_SERVER=$CE_HOST JOB_MANAGER=lcgcondor CE_BATCH_SYS=condor BATCH_BIN_DIR=/opt/condor/bin BATCH_VERSION=`rpm -qa | grep ^condor | sed 's/\(.*\)-1.*/\1/g'` BATCH_LOG_DIR=/home/condorr/spool CONDOR_ARCH=INTEL CONDOR_OS=`uname -s` # Classic SE (do not ask why still needed ) CLASSIC_HOST=$SE_HOST CLASSIC_STORAGE_DIR="/dpm/hep.phy.cam.ac.uk/home" ############################### # DPM configuration variables # ############################### # DPMDATA is now deprecated. Use an entry like $DPM_HOST:/filesystem in # the DPM_FILESYSTEMS variable. DPM_INFO_USER=dpminfo DPM_INFO_PASS="_xxxxx_" DPM_HOST=$SE_HOST # The name of the DPM head node DPM_D01=disk01.$MY_DOMAIN # DPM pool nodes DPM_D02=disk02.$MY_DOMAIN DPM_D03=disk03.$MY_DOMAIN DPM_D04=disk04.$MY_DOMAIN DPM_D05=disk05.$MY_DOMAIN DPM_D06=disk06.$MY_DOMAIN DPM_D07=disk07.$MY_DOMAIN DPM_D08=disk08.$MY_DOMAIN DPM_D09=disk09.$MY_DOMAIN DPM_D10=disk10.$MY_DOMAIN DPM_D11=disk11.$MY_DOMAIN DPM_D12=disk12.$MY_DOMAIN DPMPOOL=dpmCam_2007 # The DPM pool name # The filesystems/partitions parts of the pool DPM_FILESYSTEMS="$DPM_D01:/dpm_data $DPM_D02:/dpm_data $DPM_D03:/dpm_data $DPM_D04:/dpm_data $DPM_D05:/dpm_data $DPM_D06:/dpm_data1 $DPM_D06:/dpm_data2 $DPM_D07:/dpm_data1 $DPM_D07:/dpm_data2 $DPM_D08:/dpm_data $DPM_D09:/dpm_data $DPM_D10:/dpm_data1 $DPM_D10:/dpm_data2 $DPM_D11:/dpm_data1 $DPM_D11:/dpm_data2 $DPM_D12:/dpm_data1 $DPM_D12:/dpm_data2" DPMFSIZE=200M # Default reserved space DPMROOT="/dpm/$MY_DOMAIN/home" # Set by Santanu # From now on we use DPM_DB_USER and DPM_DB_PASSWORD to make clear # it is different role from that of the dpmmgr unix user who owns the # directories and runs the daemons. DPM_DB_USER=dpmmgr # The database user DPM_DB_PASSWORD="_xxxxx_" # The database user password DPM_DB_HOST=$DPM_HOST # The DPM database host DPMMGR_UID=505 DPMMGR_GID=505 # RFIO_PORT_RANGE="20000 25000" # Optional, default value SE_LIST=$DPM_HOST SE_ARCH="multidisk" # "disk, tape, multidisk, other" SE_MOUNT_INFO_LIST=none SE_GRIDFTP_LOGFILE=/var/log/dpm-gsiftp/dpm-gsiftp.log ################################ # BDII configuration variables # ################################ SITE_BDII_HOST=vserv02.hep.phy.cam.ac.uk BDII_SITE_TIMEOUT=120 BDII_RESOURCE_TIMEOUT=`expr "$BDII_SITE_TIMEOUT" - 5` GIP_RESPONSE=`expr "$BDII_RESOURCE_TIMEOUT" - 5` GIP_FRESHNESS=60 GIP_CACHE_TTL=300 GIP_TIMEOUT=150 BDII_HTTP_URL="http://grid-deployment.web.cern.ch/grid-deployment/gis/lcg2-bdii/dteam/lcg2-all-sites.conf" # Set this to use FCR BDII_FCR="http://goc.grid-support.ac.uk/gridsite/bdii/BDII/www/bdii-update.ldif" # List of the services provided by the site BDII_REGIONS="CE SE" BDII_CE_URL="ldap://$CE_HOST:2170/mds-vo-name=resource,o=grid" BDII_CE2_URL="ldap://$CE2_HOST:2170/mds-vo-name=local,o=grid" BDII_SE_URL="ldap://$CLASSIC_HOST:2170/mds-vo-name=resource,o=grid" BDII_FTS_URL="ldap://$FTS_HOST:2170/mds-vo-name=resource,o=grid" BDII_RB_URL="ldap://$RB_HOST:2135/mds-vo-name=local,o=grid" BDII_PX_URL="ldap://$PX_HOST:2135/mds-vo-name=local,o=grid" #BDII_VOBOX_URL="ldap://$VOBOX_HOST:2135/mds-vo-name=local,o=grid" # Use this to set your contact string. # Ex.: BDII_BIND="mds-vo-name=mystorage,o=grid" # E2EMONIT specific settings # This specifies the location to download the host specific configuration file E2EMONIT_LOCATION=grid-deployment.web.cern.ch/grid-deployment/e2emonit/production # Replace this with the siteid supplied by the person setting up the networking topology. E2EMONIT_SITEID=my.siteid ############################## # VO configuration variables # ############################## # For help see: https://lcg-sft.cern.ch/yaimtool/yaimtool.py # # Space separated list of supported VOs VOS="alice atlas calice camont cms dteam euindia gridpp lhcb ops vo.southgrid.ac.uk" #enmr.eu QUEUES="alice atlas calice camont cms dteam euindia gridpp lhcb ops southgrid" #enmr VO_SW_DIR=/experiment-software EDG_WL_SCRATCH=/tmp # Scratch directory for jobs ALICE_GROUP_ENABLE="alice" ATLAS_GROUP_ENABLE="atlas" CALICE_GROUP_ENABLE="calice" CAMONT_GROUP_ENABLE="camont" CMS_GROUP_ENABLE="cms" DTEAM_GROUP_ENABLE="dteam" #ENMR_GROUP_ENABLE="enmr.eu" EUINDIA_GROUP_ENABLE="euindia" GRIDPP_GROUP_ENABLE="gridpp" LHCB_GROUP_ENABLE="lhcb" OPS_GROUP_ENABLE="ops" SOUTHGRID_GROUP_ENABLE="vo.southgrid.ac.uk" SHORT_GROUP_ENABLE=$QUEUES

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