Dear Monica,
> Hello, I want to register the proton density images of my subjects to the pronton density of one of them. Which configuration file you recommend me and which parameters shall I modify? Resolution is not the best thing of my images.
my first recommendation would be to try and find a PD image in standard space, to resample this so that it has the same voxel and matrix size as the FSL 2mm T1 template and to use the standard configuration file.
Jesper
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