Hi Varina,
The dr_stage3_ic# files are already in standard space (or whatever you chose as the reference image in the group ICA). Are you getting an error when you overlay those stat maps onto the MNI image?
Cheers,
David
On Apr 30, 2012, at 4:49 PM, Varina Wolf wrote:
> Hello Experts,
>
> In order to overlay the stat images (after Concat ICA, dual regression with randomise) onto an MNI image, I think that I need to transform the stat matrix such that it has the same dimensions as the standard.
>
> I am familar with the single subject transform matrix example_func2standard.mat, but not sure where to find the transform matrix for this group data.
>
> I believe then the next step would be:
>
> flirt -in dr_stage3_ic#_tfce_corrp_tstat1.nii -ref MNI_2mm_brain.nii -out stattostandard -init TRANSFORMMATRIX -applyxfm
>
> Thanks for your teaching,
> Varina
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