Hi List,
I have been trying to use the new surf2surf tool that comes as part of the probtrackx2 pre-release to convert a FIRST vtk surface into FreeSurfer asc. My command line input is:
surf2surf --surfin=first_inputs.txt --surfout=freesurfer_outputs.txt --convin=first --volin=first_T1.nii.gz --convout=freesurfer --volout=freesurfer_T1.nii.gz --xfm=first_to_freesurfer.mat
This exits without any sorts of errors, but when I view the resulting surface in tkmedit, it only marginally encloses the intended region. I have also confirmed this by using the converted surface as both a seed and stop mask in probtrackx2. There isn't any problem with my transformation, 'first_to_freesurfer.mat', so I am not sure what the issue is. Any ideas?
Thanks,
-Tyler
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