Hi,
I've managed to do the first step of vbm, the fslvbm_1_bet -b bit successfully but when i went to do the second stage this is what happened:
macbook-air-3:~ volumetry$ cd desktop
macbook-air-3:desktop volumetry$ cd vbm-t1dm
macbook-air-3:vbm-t1dm volumetry$ cd struc
macbook-air-3:struc volumetry$ cd slicesdir
macbook-air-3:slicesdir volumetry$ fslvbm_2_template -n
/usr/local/fsl/bin/fslvbm_2_template: line 91: cd: struc: No such file or directory
chmod: fslvbm2a: No such file or directory
wc: ./fslvbm2a: open: No such file or directory
Running segmentation: ID=61752
chmod: fslvbm2b: No such file or directory
wc: ./fslvbm2b: open: No such file or directory
Running initial registration: ID=61792
Creating first-pass template: ID=61802
chmod: fslvbm2d: No such file or directory
wc: ./fslvbm2d: open: No such file or directory
Running registration to first-pass template: ID=63815
Creating second-pass template: ID=63825
Study-specific template will be created, when complete, check results with:
fslview struc/template_4D_GM
and turn on the movie loop to check all subjects, then run:
fslview /usr/local/fsl/data/standard/tissuepriors/avg152T1_gray struc/template_GM
to check general alignment of mean GM template vs. original standard space template.
macbook-air-3:slicesdir volumetry$
What do you suppose is the problem?
Thank you again for your time
Kind Regards
Michael Maxwell
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