Hello all,
I've set up POSSUM using the instructions at http://www.fmrib.ox.ac.uk/fsl/possum/run.html .
POSSUM runs and the log file seems to state that it finishes:
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Making possum directory structure
Processing stage
Wed Apr 18 14:06:33 EDT 2012
/usr/share/fsl/4.1/bin/fsl_sub -T 2 -l /net/synapse/nt/makedon1/physioBOLD/POSSUM/logs -N possum -t /net/synapse/nt/makedon1/physioBOLD/POSSUM/possum.com
Post processing stage
Wed Apr 18 14:06:33 EDT 2012
/usr/share/fsl/4.1/bin/fsl_sub -T 10 -j 11711 -F -l /net/synapse/nt/makedon1/physioBOLD/POSSUM/logs /bin/possumX_postproc.sh /net/synapse/nt/makedon1/physioBOLD/POSSUM 1
Done
Wed Apr 18 14:06:33 EDT 2012
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Unfortunately, the output folder does not contain the output files.
Here is a directory listing of the output folder:
brain.nii.gz logs MRpar possum.com possum.log pulse.com pulse.posx pulse.posz slcprof T2timecourse
diff_proc motion noise possum.fsf pulse pulse.info pulse.posy pulse.readme T2.nii.gz
Note that image_abs.nii.gz, image_phase.nii.gz and signal are all missing.
What went wrong?
Thank you in advance.
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