If the resulting spatially normalised images seem to be perfectly
aligned, then I think you are probably doing things well.
Best regards,
-John
On 3 March 2012 13:21, Hikaru Takeuchi <[log in to unmask]> wrote:
> Dear Prof. John Ashburner,
>
> I noticed my mistakes and I noticed that the FA*white matter tissue probablity maps that were used in create DARTEL procedures had to be coregistered and resliced to rc2 image (dartel import image) while FA*white matter tissue probablity maps that were used in normalized MNI space procedures had to be coregistered to c2 image. Rc2 images and c2 images were not aligned and I had to take care of that and that was my mistake.
> Now, resultant dartel normalized FA images are perfectly aligned at the outer edge and within the white matter tissues with different FA values!
> And I can go to the analysis after the sophistication of this process. I would be happy if you could tell me if I am still making mistakes.
> This principle may be used in other images and segments and helped a lot.
> And thanks for the information on T1 segmentation, I will tackle with this problem next and will respond.
> Many thanks for the detailed information, again!
>
> Takeuchi
>
>
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