Hello Andreas,
The flirt call is in proc feat5:flirt in featlib.tcl:
fsl:exec "${FSLDIR}/bin/flirt -ref $ref -in $in -out $out -omat ${out}.mat -cost corratio -dof $dof -searchrx -$search $search -searchry -$search $search -searchrz -$search $search -interp $interp $init $in_weighting"
a quick change of corratio to mutalinfo will change the cost function for all flirt calls - alternately you could put some logic in to use different cost-functions depending on the values of $ref and $out
Many Regards
Matthew
> Good evening,
>
> can we tell Feat's Flirt registration of the EPI to highres to use
> -searchcost mutualinfo instead of corratio? What would we need to edit? I
> could not pick it in feat.tcl
> Cheers,
> Andreas
>
|