Dear Diego,
Did you look inthe file
/dms/home/desposi/nmr/tombunney/figures/spectra/individual_spectra/ccp/nmr/Nmr/defaultProject+defaultProject_desposi_2011-08-04-15-30-14-992_00001.xml
?
Can you tell what it says in line 4106, column 19, if there is anything
unusual there? This might be a truncated file.
Yours,
Rasmus
---------------------------------------------------------------------------
Dr. Rasmus H. Fogh Email: [log in to unmask]
Dept. of Biochemistry, University of Cambridge,
80 Tennis Court Road, Cambridge CB2 1GA, UK. FAX (01223)766002
On Wed, 28 Mar 2012, Diego Esposito wrote:
> does anyone know how to sort this error?
>
> Error loading file for: <ccp.nmr.Nmr.NmrProject ['defaultProject']>
> Reading: <open file '/dms/home/desposi/nmr/tombunney/figures/spectra/
individual_spectra/ccp/nmr/Nmr/defaultProject+defaultProject_desposi_2011-08-04-15-30-14-992_00001.xml', mode 'r' at 0xcdb9f98>
> Last xml tag read: NMR.ExpDim.expDimRefs
> Parser state was: reading
> Current object was: []
> Traceback (most recent call last):
> File "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/ccpnmr/analysis/AnalysisGui.py", line 226, in <module>
> main(projectDir, max_size, glDirect)
> File "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/ccpnmr/analysis/AnalysisGui.py", line 102, in main
> project = loadProject(top, path=projectDir)
> File "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/ccp/gui/Io.py", line 92, in loadProject
> if isinstance(dataStore, NumericMatrix) and not dataStore.nmrDataSources:
> File "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/ccp/api/general/DataLocation.py", line 6134, in getNmrDataSources
> tobj.load()
> File "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/api/Implementation.py", line 5030, in load
> self.loadFrom(repositories[0])
> File "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/api/Implementation.py", line 5064, in loadFrom
> XmlIO.loadTopObject(repository.url.getDataLocation(), self)
> File "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/format/xml/XmlIO.py", line 236, in loadTopObject
> return loadFromStream(open(filePath), topObjId=topObjId, topObject=topObject)
> File "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/format/xml/XmlIO.py", line 267, in loadFromStream
> partialLoad=partialLoad)
> File "/dms/home/tragan/bin/ccpnmr_32/ccpnmr2.1/python/memops/xml/Implementation.py", line 4338, in loadFromStream
> for event, elem in ElementTree.iterparse(stream, events=("start", "end")):
> File "<string>", line 64, in __iter__
> SyntaxError: not well-formed (invalid token): line 4106, column 19
>
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