Hello,
We're not sure, but Tim suggested that in the "Sequence file" part of the
Molecular System tab in the Aria GUI that when you have selected the CCPN
name make sure that the Format is set to CCPN rather than XML. If that is
not the problem, can you email me (off list) the project.xml file (just in
case we can spot something).
Wayne
On Wed, 21 Mar 2012, Lauriane Lecoq wrote:
> Hi everyone,
>
> Sorry to bother you again.
> I now have a problem when I try to run the aria project. All the importations
> are ok, and the project directory (run1) is correctly created.
> Yet, when I try to run "aria2 project.xml", it stops almost immediately.
>
> Error message:
>
> Traceback (most recent call last):
> File "/data/soft/aria2.3/aria2.py", line 903, in <module>
> verbose_level, use_condor=condor)
> File "/data/soft/aria2.3/aria2.py", line 811, in run_aria
> project.load_and_preprocess_data()
> File "/data/soft/aria2.3/src/py/aria/Project.py", line 1426, in
> load_and_preprocess_data
> self.read_data()
> File "/data/soft/aria2.3/src/py/aria/Project.py", line 1156, in read_data
> self.read_molecule(cache)
> File "/data/soft/aria2.3/src/py/aria/Project.py", line 506, in
> read_molecule
> molecule = pickler.load(filename)
> File "/data/soft/aria2.3/src/py/aria/AriaXML.py", line 252, in load
> return self.__load(filename, gzip)
> File "/data/soft/aria2.3/src/py/aria/AriaXML.py", line 244, in __load
> self.error(Exception, '%s: %s' % (filename, msg))
> File "/data/soft/aria2.3/src/py/aria/ariabase.py", line 211, in error
> raise exception, msg
> Exception: USER ERROR <aria.AriaXML.AriaXMLPickler> File
> "/data/soft/aria2.3/src/py/aria/AriaXML.py", line 252 in load
> /data/people/lecoq/aria2/ldtfmII_ccp/run1/data/sequence/: [Errno 21] Is a
> directory
>
>
> Is there a problem with the sequence? I selected the molecular system in the
> ccpn project.
>
> Thanks for your help,
>
> Lauriane
>
> --
> Lauriane Lecoq
>
> phD student
> Laboratoire de Resonance Magnetique Nucleaire
> Institut de Biologie Structurale
> 41, rue Jules Horowitz
> 38027 Grenoble cedex 1
> Tel : (33)-4-38-78-96-33
> Email : [log in to unmask]
>
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