Hello,
I'm not sure what that is about at all. I've tried from two different
computers and it seems to be ok for me. I'll email you the Analysis
specific patches (which I hope does not break everything).
Wayne
On Wed, 28 Mar 2012, kancherla Aswani Kumar wrote:
> Hello,
>
> I have made the "www" to "www2" change in the appropriate file
> (ccpnmr/ccpnmr2.1/python/ccpnmr/update/UpdateAgent.py) as mentioned in the
> e-mail. Even now, when I run updateAll, it gives out-put as "No updates".
>
> I am also unable to do the updates using "M::Project::Updates::Refresh_list".
> Here I still get the message "can not access update server via network". The
> pop-up shows the net work server correctly as
> "http://www2.ccpn.ac.uk/~ccpn/ccpNmrUpdate2.1/". When I try to open this url
> using the internet browser (firefox), I am able to go to the web page. (I guess
> that, this indicates that the update server is not down!).
>
> The proxy settings (proxy authentication for http, https and ftp has been set)
> seem to be fine. I am wondering where else might the problem be!
>
> with regards,
> Aswani Kumar
>
>> Hello,
>>
>> That change in AnalysisPopup only works for updates using the Analysis
>> Update dialog. For updateAll you also need to edit line 67 in:
>>
>> ccpnmr/ccpnmr2.1/python/ccpnmr/update/UpdateAgent.py
>>
>> which currently says:
>>
>> UPDATE_SERVER_LOCATION = 'www.ccpn.ac.uk'
>>
>> and that www should also now say www2.
>>
>> And it was pointed out to me that I needed to put these updates on the
>> update server or else you will get reversions to the www version, so I
>> have done that now (there are a couple of other www changes I made in
>> UpdateAgent.py, that are of lesser importance).
>>
>> On the LinkSeqSpinSystems front, that is definitely different that the
>> current version so you should try and do the updates. If you cannot get
>> the updates to work then I can email patches.
>>
>> Note, I've just been told that the air conditioning in our server room is
>> not working and it might be necessary to reboot and/or turn it off
>> temporarily, which will make updates impossible to get.
>>
>> Wayne
>>
>> On Wed, 28 Mar 2012, kancherla Aswani Kumar wrote:
>>
>>> Hello Dr.Wayne,
>>>
>>> Many thanks for the really prompt response.
>>>
>>> I made the appropriate change (i.e www.ccpn.ac.uk to www2.ccpn.ac.uk in the
>>> file
>>> AnalysisPopup.py), however the update still gives the same error message viz.,
>>> "can not access update server via network". I tried to execute the update via
>>> the shell using "ccpnmr/bin/updateAll". It gives an out-put saying "No
>>> updates".
>>>
>>> I haven't yet resolved the problem and I am unable to figure out where the
>>> problem could be. I am pasting below a trace back for an error message which
>>> had
>>> occurred before I made any changes in the AnalysisPopup.py, if that is going
>>> to
>>> be of any use.
>>>
>>> with regards,
>>> Aswani Kumar K
>>>
>>>
>>> **********************************************************************************************
>>>>>> start generating output : ccp.general.DataLocation.DataLocationStore
>>> start generating output : ccpnmr.Analysis.AnalysisProject
>>> Exception in Tkinter callback
>>> Traceback (most recent call last):
>>> File "/home/nmrware/ccpnmr/python2.6/lib/python2.6/lib-tk/Tkinter.py", line
>>> 1410, in __call__
>>> return self.func(*args)
>>> File
>>> "/home/nmrware/ccpnmr/ccpnmr2.1/python/memops/gui/PartitionedSelector.py",
>>> line 137, in <lambda>
>>> command = lambda n=i, s=self: s.selectButton(n)
>>> File
>>> "/home/nmrware/ccpnmr/ccpnmr2.1/python/memops/gui/PartitionedSelector.py",
>>> line 299, in selectButton
>>> self.callback(self.objects[i])
>>> File
>>> "/home/nmrware/ccpnmr/ccpnmr2.1/python/ccpnmr/analysis/popups/WindowPopup.py",
>>> line 1073, in toggleStrips
>>> num = axisRegions.index(axisRegion)
>>> ValueError: list.index(x): x not in list
>>> start generating output : ccp.general.DataLocation.DataLocationStore
>>> start generating output : ccpnmr.Analysis.AnalysisProject
>>> Exception in Tkinter callback
>>> Traceback (most recent call last):
>>> File "/home/nmrware/ccpnmr/python2.6/lib/python2.6/lib-tk/Tkinter.py", line
>>> 1410, in __call__
>>> return self.func(*args)
>>> File "/home/nmrware/ccpnmr/python2.6/lib/python2.6/lib-tk/Tkinter.py", line
>>> 495, in callit
>>> func(*args)
>>> File
>>> "/home/nmrware/ccpnmr/ccpnmr2.1/python/ccpnmr/analysis/popups/LinkSeqSpinSystems.py",
>>> line 2850, in <lambda>
>>> self.after_idle(lambda :self.updateWindows(window)) # Axis panel notifiers
>>> need a bit of time
>>> File
>>> "/home/nmrware/ccpnmr/ccpnmr2.1/python/ccpnmr/analysis/popups/LinkSeqSpinSystems.py",
>>> line 2890, in updateWindows
>>> self.updateQueryPanes()
>>> File
>>> "/home/nmrware/ccpnmr/ccpnmr2.1/python/ccpnmr/analysis/popups/LinkSeqSpinSystems.py",
>>> line 1529, in updateQueryPanes
>>> windowData = self.getRootWindows()
>>> File
>>> "/home/nmrware/ccpnmr/ccpnmr2.1/python/ccpnmr/analysis/popups/LinkSeqSpinSystems.py",
>>> line 1378, in getRootWindows
>>> yIsotopes = set(axisPanel.axisType.isotopeCodes)
>>> AttributeError: 'NoneType' object has no attribute 'isotopeCodes'
>>> start generating output : ccp.general.DataLocation.DataLocationStore
>>> start generating output : ccpnmr.Analysis.AnalysisProject
>>> start generating output : ccpnmr.Analysis.AnalysisProject
>>> start generating output : ccp.general.DataLocation.DataLocationStore
>>> successfully saved project
>>> *******************************************************************************************************************************************************
>>>
>>>> Hello,
>>>>
>>>> If anyone wants an update to 2.1.5 then you will need to edit one file to
>>>> make the system work again (it stopped working because our web server
>>>> changed). In the file:
>>>>
>>>> ccpnmr/ccpnmr2.1/python/ccpnmr/analysis/AnalysisPopup.py
>>>>
>>>> at around line 2705 you will see:
>>>>
>>>> popup = UpdatePopup(self, serverLocation='www.ccpn.ac.uk',
>>>> serverDirectory=serverDirectory,
>>>> dataFile='__UpdateAgentData.db',
>>>> helpUrl=url)
>>>>
>>>> Change that www.ccpn.ac.uk to www2.ccpn.ac.uk (and you will have to
>>>> restart Analysis for this to take effect).
>>>>
>>>> Wayne
>>>>
>>>> On Wed, 28 Mar 2012, Aswani Kumar wrote:
>>>>
>>>>> Hello Analysis Users,
>>>>>
>>>>> I am working with Analysis Version 2.1.5 on openSUSE 11.4 (x86_64).
>>>>>
>>>>>
>>>>> I wanted to include spectra from the proton correlation experiments viz.,
>>>>> HcccoNH.TOCSY (as the query spectrum) and HNHA, HNHB and TOCSY_HSQC (as the
>>>>> target spectra) for protein sequence assignments. However the pop-up
>>>>> "M::Assignment::Proten_Sequence_Assignment::Windows_and_Spectra" does not
>>>>> show
>>>>> an option for inclusion of HcccoNH.TOCSY as a query spectrum.
>>>>>
>>>>> I wanted to do a "Refresh_List" in the "M::Project::Updates" (as I suspected
>>>>> that I have lost the update in a re-installation of Analysis). However the
>>>>> update does not work and gives a message " Can not access update server via
>>>>> net work".
>>>>>
>>>>> My apologies if I missed any mail in the CCPNMR mailing list regarding the
>>>>> update server. I tried to search the archives to find any e-mail regarding
>>>>> updates but in vain. Any suggestions would be of great help to me.
>>>>>
>>>>> Many thanks in advance.
>>>>>
>>>>> with best wishes,
>>>>> Aswani Kumar K
>>>>>
>>>>> --
>>>>> K.Aswani Kumar, PhD Student,
>>>>> C/o Prof. Siddhartha P Sarma,
>>>>> Molecular Biophysics Unit,
>>>>> Indian Institute of Science,
>>>>> Bangalore-560012, India.
>>>>> Phone: 09945633467 (mobile)
>>>>> 080-22932839 (lab)
>>>>>
>>>>
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>>>>
>>>
>>>
>>>
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>
>
>
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