Hi,
A quick and efficient option for morphing between multiple states (structure
A --> structure B) defined by separate PDB structures is using UCSF chimera.
The program will generate a user-defined number of intermediate pdb models
that can be saved and used in Pymol.
Best,
Federico Forneris, PhD
-------
Crystal and Structural Chemistry
Bijvoet Center for Biomolecular Research - Utrecht University
Padualaan 8
3584 CH UTRECHT - The Netherlands
Tel. +31 (0) 30 253 2868 - Fax +31 (0) 30 253 3940
http://www.crystal.chem.uu.nl/group-gros/
From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of sonali
dhindwal
Sent: mercoledė 21 marzo 2012 15:52
To: [log in to unmask]
Subject: [ccp4bb] using pymol for making movie of change in protein
structure
Dear All,
My query is slightly out of scope of ccp4.
I need some suggestions for making movie using pymol to show conformation of
a reactive site loop, through the use of three crystal structure which
are available showing this change.
I have seen many people present the structural information in the form of
movie, to show how the ligands come and the flexible residues moves giving
change in the active site by movement of the flexible loops.
I found emovie and installed the plugin but pymol installed on my system
doesnt support the morph feature.
Can someone please help in suggesting some other tool and tutorial for the
same.
Thanks in advance.
Regards
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