yes, I tried to change the number of peaks with:
qboot -k data.nii.gz -m nodif_brain_mask.nii.gz -r bvecs -b bvals --npeaks 3
but it gives:
--npeaks: Missing non-optional argument!
why?
No dia 16 de Fevereiro de 2012 15:41, Stamatios Sotiropoulos
<[log in to unmask]> escreveu:
> Yes, it is the dyads*.
>
> So you can select the number of peaks to be returned from each ODF using --npeaks. The default is 2, which is reasonable for typical diffusion data and spherical harmonics orders.
> Run qboot on a terminal and it will give you a help menu.
>
> Cheers
> Stam
>
>
> On 16 Feb 2012, at 15:35, Rui Lavrador wrote:
>
>> Other questions,
>>
>> Where is the information about the peaks? It is in the dyads<i>.nii.gz
>> files? How it defines the number of <i>? It is automatic?
>>
>> thanks
>>
>> Rui Lavrador
>>
>>
>> No dia 16 de Fevereiro de 2012 15:07, Stamatios Sotiropoulos
>> <[log in to unmask]> escreveu:
>>>
>>> You can visualize the peaks of the ODFs using FSLview. Similar to visualizing the results of bedpostx.
>>> You cannot visualize the ODF glyphs at the moment, sorry.
>>>
>>> Cheers
>>> Stam
>>>
>>>
>>> On 16 Feb 2012, at 15:03, Rui Lavrador wrote:
>>>
>>>> Hi all,
>>>> How can I visualize the ODFs , resulting from qboot, on an image?
>>>>
>>>> Regards,
>>>> Rui Lavrador, MSc
>>>>
>>>> Visual Neuroscience Laboratory
>>>> IBILI-Faculdade de Medicina
>>>> Azinhaga de Santa Comba
>>>> 3000-548 Coimbra, Portugal
>>>>
>>
>>
>>
>>
>> --
>> Rui Lavrador
>>
>> Visual Neuroscience Laboratory
>> IBILI-Faculdade de Medicina
>> Azinhaga de Santa Comba
>> 3000-548 Coimbra, Portugal
>> Phone: +351 964985485
>> e-mail: [log in to unmask]
>> e-mail2: [log in to unmask]
>>
--
Rui Lavrador
Visual Neuroscience Laboratory
IBILI-Faculdade de Medicina
Azinhaga de Santa Comba
3000-548 Coimbra, Portugal
Phone: +351 964985485
e-mail: [log in to unmask]
e-mail2: [log in to unmask]
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