Dear all,
sorry for keeping up this topic, but I still have found no way to save masks in nii-format... (they only come as hdr/img)
FSLOUTPUTTYPE is set to NIFTI_GZ; I have also tried to set FSLOUTPUTTYPE to NIFTI, with no effect - FSLVIEW seems to ignore this setting.
In the fsl.csh and fsl.sh in /usr/share/fsl/4.1/etc/fslconf, FSLOUTPUTTYPE is also set to NIFTI_GZ.
Any help would be really appreciated!
Carsten
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