To whom it may concern ,
I want to know, for doing nonlinear registration (FNIRT) in melodic for instance, should I have the hole brain in EPI images? Since nonlinear registration just perform between T1 (high resolution) and Atlas (standard space), I believe it is not necessary. But it seems FNIRT try to fit EPI images (which are just part pf the brain) to the hole brain of MNI atlas?!!!
Bests,
Armin,
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