Matthew,
Okay, great. I uploaded the data. The file name is:
upload_michael_fsl.tar.gz
The 6-digit reference number is: 294333
Please let me know, if you need any additional information.
Thanks,
Michael
On Mon, 9 Jan 2012 15:50:54 +0000, Matthew Webster <[log in to unmask]> wrote:
>Hello Michael,
> If you want to upload your input files to:
>
>http://www.fmrib.ox.ac.uk/cgi-bin/upload.cgi
>
>and let me know the 6-digit reference number, I will check to see if this is a bug introduced into randomise 2.9.
>
>Many Regards
>
>Matthew
>> One more thing, regarding this issue,
>>
>> I'm currently running fsl 4.1 (build 419) and randomise v2.9. I installed my fsl package via Debian.
>>
>> This is where I am getting the error message.
>>
>> Just on a hunch, i ran the same command line on our old server that had FSL 4.1 (build 416) and randomise v2.6, and I received no error message. The analysis actually worked.
>>
>> So,I'm not so sure what is going on. Is there a bug in v2.9, possibly?
>>
>> My older version of randomise is installed on Redhat 2.6.9.
>>
>> I've installed build 419 of FSL via the Debian package where we are running Ubuntu. Could that be an issue?
>>
>> Michael
>>
>> On Mon, 9 Jan 2012 14:13:29 +0000, Michael Keaser <[log in to unmask]> wrote:
>>
>>> Hello,
>>>
>>> Yes, I double checked in FSLview (and also in AFNI viewer) that both sets of masks overlay the data.
>>>
>>> I tried gunzipping the nii files for both the masks and the all_skelentonized data see if that was the issue, and still the same error occurs.
>>>
>>> Michael
>>>
>>>
>>> On Mon, 9 Jan 2012 13:52:36 +0000, Matthew Webster <[log in to unmask]> wrote:
>>>
>>>> Hi,
>>>> Can you double check that the mask overlaps the data ( e.g. just quickly check them in FSLview? )
>>>>
>>>> Many Regards
>>>>
>>>> Matthew
>>>>
>>>>> Hello,
>>>>>
>>>>> Thanks for your response.
>>>>>
>>>>> Unfortunately, I've tried using both mask optoins mean_FA_mask and mean_FA_skeleton.nii.gz, and I still get the same error message.
>>>>>
>>>>> Anybody else having the same issue or is there another step that I am missing?
>>>>>
>>>>> Michael
>>>>> ________________________________________
>>>>> From: Haitao Ge
>>>>> Sent: Saturday, January 07, 2012 8:47 AM
>>>>> To: [log in to unmask]
>>>>> Subject: Re: [FSL] TBSS exception
>>>>>
>>>>> Hi Michael
>>>>>
>>>>> I think you have input the wrong mask. You have input the mean FA skeleton
>>>>> instead of mean FA mask.
>>>>>
>>>>> Haitao
>>>>>
>>>>> Center for Sectional and Imaging Anatomy
>>>>> Shandong University School of Medicine
>>>>> 44#, West Wenhua Rd.
>>>>> Jinan 250012, Shandong
>>>>> P.R.China
>>>>>
>>>>> -----原始邮件-----
>>>>> From: Michael Keaser
>>>>> Sent: Saturday, January 07, 2012 5:44 AM
>>>>> To: [log in to unmask]
>>>>> Subject: Re: [FSL] TBSS exception
>>>>>
>>>>> Hello,
>>>>>
>>>>> I too have had the same problem with the error mask is blank.
>>>>>
>>>>> Here is my command and the output from it:
>>>>>
>>>>> randomise -i all_FA_skeletonised.nii.gz -o pairedT -d design-glm.mat -t
>>>>> design-glm.con -f design-glm.fts -m mean_FA_skeleton.nii.gz -e
>>>>> design-glm.grp -T
>>>>> randomise options: -i all_FA_skeletonised.nii.gz -o pairedT -d
>>>>> design-glm.mat -t design-glm.con -f design-glm.fts -m
>>>>> mean_FA_skeleton.nii.gz -e design-glm.grp -T
>>>>> Loading Data: ERROR: Program failed
>>>>>
>>>>> An exception has been thrown
>>>>> Data mask is blank.
>>>>>
>>>>>
>>>>> I'm not sure what is going on. Anyone have any ideas? Your help would
>>>>> greatly be appreciated.
>>>>>
>>>>> Thanks,
>>>>>
>>>>> Michael
>>>>>
>>
|