I may well be wrong, but it looks as if the top images are your
functionals, and the bottom ones are your template, the red outline
being the opposite. I think the registration looks reasonable, but
perhaps your functional image is likely missing a number of slices at
the top?
Could that be the problem?
On 7 January 2012 16:56, cindy hagan <[log in to unmask]> wrote:
> Dear FSL users,
>
> My functional imaging data appear to be registering improperly to standard
> space. While the registration of images are good in general, the outline of
> the template (in red) does not seem to correspond to the correct image. In
> fact, it appears that all top outlines belong to the bottom images and all
> bottom outlines belong to the top images. A picture showing the issue is
> attached.
>
> Any insight into resolving this issue would be appreciated.
>
> Thanks in advance for your help,
>
> Cindy
--
Vicente Grabovetsky, Alejandro (Sasha)
Postdoctoral researcher
Donders Centre for Cognitive Neuroimaging
http://www.doellerlab.com
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