I was being a bit lazy and did not include a patch in my last mail, so here is a patch with the fix. It would be nice to see this fix included in future releases.
Brendan Moloney
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From: Brendan Moloney
Sent: Wednesday, November 30, 2011 5:42 PM
To: [log in to unmask]
Subject: fsl_sub and default sge_request
Hello,
In my default sge_request I have set '-b y' so that users can qsub commands on the path without giving the full path (our paths are the same on submission and execution hosts).
However this causes fsl_sub to fail when it is passes a text file of commands to run. To fix it I had to add the '-b n' option to the generated sge_command on line 336 of fsl_sub.
Thanks,
Brendan Moloney
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