Dear FSL users,
I am experiencing a problem while trying to process my MD images with the TBSS pipeline. I performed the TBSS analysis as explained on the online manual, but I can't obtain the all_MD_skeletonised image :
merging all upsampled MD images into single 4D image
projecting all_MD onto mean FA skeleton
Image Exception : #5 :: Out of Bounds (time index)
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/tbss_non_FA: line 104: 30767 Abandon ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_${ALTIM}_skeletonised -a all_$ALTIM
now run stats - for example:
randomise -i all_MD_skeletonised -o tbss_MD -m mean_FA_skeleton_mask -d design.mat -t design.con -n 500 --T2 -V
(after generating design.mat and design.con)
Apparently, something is "out of bounds", but I can't quite figure what.
Thanks in advance for your input.
Tim Coolen
Medical Student
Centre de Recherches du Cyclotron
University of Liege - Belgium
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