The volumes for the cortical parcellations in FS are indeed based on its
surface-stream. But why couldn't you use those? They will be more
accurate than a "volumetric" based labeling of the EC.
cheers,
-MH
On Fri, 2011-12-02 at 12:03 +0100, Alejandro Vicente Grabovetsky wrote:
> Dear Mark,
> Thanks! I've tried freesurfer briefly but was unsure if it could also do volumetric labelling of EC, as well as surface based. Do you know if that's the case?
> Thanks again!
> S
>
> Sent from my iPhone
>
> On 2 Dec 2011, at 00:10, Mark Jenkinson <[log in to unmask]> wrote:
>
> > Dear Sasha,
> >
> > A different utility exists - it's called FreeSurfer!
> > That is the best way to get good cortical segmentation.
> >
> > All the best,
> > Mark
> >
> > On 1 Dec 2011, at 18:32, Alejandro Vicente Grabovetsky wrote:
> >
> >> Dear FSLers,
> >>
> >> I have been using FIRST to segment subcortical structures, but was wondering if it would be possible to apply it to cortical structures as well (e.g. Entorhinal cortex) somehow, or whether a different such utility exists.
> >>
> >> Thank you in advance,
> >> Sasha
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