sorry to jump in on this post- but I seem to be having the rare problem of registration failure. After running <fslvbm_2_template -a> my segmented\registered (GM_to_T.nii) images are flipped (not systematically, some are A-P flipped, some I/S)) and the labels in FSLview are not correct. However, the bet images (*brain.nii), and segmented (*struct_GM.nii) images are fine. Is there something I can do to fix the registration?
Thanks,
~Ellen
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