Hello,
Can you let me know which version of FSL you are using? We have an experimental version of imglob written in Python which should solve this error - I'll send a copy to your email address along with installation instructions.
Many Regards
Matthew
> Hello FSL experts,
>
> I keep getting an error with the FSL TBSS protocol. Specifically when I run the following command:
>
> tbss_non_FA dmean_dti
>
> I get the following error:
>
> /usr/local/fsl/bin/tbss_non_FA: line 95: /usr/local/fsl/bin/imglob: Argument list too long
> ** ERROR (nifti_image_read): failed to find header file for 'all_dmean_dti'
> ** ERROR: nifti_image_open(all_dmean_dti): bad header info
> Error: failed to open file all_dmean_dti
> Cannot open volume all_dmean_dti for reading!
> ** ERROR (nifti_image_read): failed to find header file for 'all_dmean_dti'
> ** ERROR: nifti_image_open(all_dmean_dti): bad header info
> Error: failed to open file all_dmean_dti
> ERROR: Could not open image all_dmean_dti
> Image Exception : #22 :: Failed to read volume all_dmean_dti
> terminate called after throwing an instance of 'RBD_COMMON::BaseException'
> /usr/local/fsl/bin/tbss_non_FA: line 104: 32510 Aborted ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_${ALTIM}_skeletonised -a all_$ALTIM
>
> This error seems to stem from the command I ran earlier, specifically when using option -n since the error doesn't come up if i use optioin -T:
>
> tbss_2_reg -n
>
> Does anyone know what to make of this? Thanks so much!
>
> Best,
> -Vee
>
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