Hi,
I agree with Miguel : this does happen to me, also in this kind of
"erratic" way ("sometimes" it happens...) - I thought it might have
something to do with pdb format features (ATOM numbers?), but
unfortunately ultimately not sure, so hesitating to post the issue...
oh, and this is a different OS : CentOS5, running on a Dell (Intel Core
i7); Coot 0.7-pre-1(revision 3708). This behavior didn't show up in Coot
0.6, that's for sure.
best
ale
Miguel Ortiz Lombardía wrote:
> Le 20/12/11 14:39, Paul Emsley a écrit :
>
>> On 20/12/11 11:42, Miguel Ortiz Lombardía wrote:
>>
>>> Hi again,
>>>
>>> This time a feline OS of the king-type on a MacBook Pro 64-bit machine
>>> is giving trouble with Coot. Compiled using fink (freshly installed by
>>> the bootstrap procedure on a fresh Xcode 4.2.1, itself installed from
>>> scratch, i.e. no previous Xcode on that machine) Again, everything
>>> compiles fine, if you forgive lots of warnings. Coot mostly runs fine,
>>> except that this time the "go to next residue" feature does not work.
>>> Neither by using the "space" key, nor by pressing "next residue" in the
>>> "Go-to atom" window.
>>>
>> "PEBCAK" is my first thought... :)
>>
>
> PEBKAA(pple) I'm afraid: after some time working on the structure, the
> "space" started to work as expected. No, the session was not closed and
> opened, no other models/maps where charged, no apparently related
> message appeared in the control window...
>
>
>>> You can crawl on the structure by re-centring with
>>> the middle mouse button...
>>>
>> bleugh. Use "g".
>>
>
> The "go to blob" thing was not in this user .coot file. I will add it,
> along with other useful keyboard bindings.
>
>
>> I used "g" "p" frequently.
>>
>
> Good idea, of course.
>
>
>>> but this does not "focus" on the next
>>> residue. The result is quite annoying, especially considering that I
>>> keep pressing "space", old habits die hard, which brings me back to the
>>> residue where the focus was some time before. Anyone saw this behaviour?
>>>
>>>
>> Go somewhere random. Display the "Go To Atom" dialog. Make sure that
>> you have active molecules.
>>
>> Press "p".
>>
>> What happens?
>>
>
> I had tried this to gain "focus": nothing happened. Now, it goes to the
> closest CA as expected and the corresponding CA is in focus.
>
>
>> Press "space"
>>
>> What happens?
>>
>>
>
> Again, it didn't work, it does now.
>
>
>> I wonder if compiler warning are related...
>>
>>
>
> This looks like a case of non-reproducible problem. I will let you know
> if I can find something a bit more "solid".
>
> Cheers,
>
>
>
--
Alejandro Buschiazzo, PhD
Research Scientist
Unit of Protein Crystallography
Institut Pasteur de Montevideo
Mataojo 2020
Montevideo 11400
URUGUAY
Phone: +598 25220910 int. 120
Fax: +598 25224185
http://www.pasteur.edu.uy/pxf
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