On 7 Dec 2011, at 10:08, Paul Emsley wrote:
> On 07/12/11 09:47, Tim Gruene wrote:
>>
>> if you want coot to refine the bond length, you have to rename the
>> residue to some name coot does not yet understand and create a cif-file
>> which includes the restraints of the residue, the ligand, and the bond
>> between the two.
>
> JLigand is the way to do this.
>
> (the interface to JLigand will be in Coot 0.7).
>
> Paul
It will be also possible to launch JLigand from CCP4 GUI starting from ccp4.6.3.0.
Currently JLigand and tutorials can be downloaded from here:
http://www.ysbl.york.ac.uk/mxstat/JLigand/index.html
or from here:
ftp://ftp.ccp4.ac.uk/JLigand/index.html
Andrey
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