Rajesh,
I think there is a simpler explanation to your problems but we need to
go back to the installation of adxv on your linux machine.
How did you extract adxv binary from the *.gz file?
I've actually learned yesterday that if you use graphic tools to
extract the binary the resulting file will not be fully functional!
Windows open but the file selection dialogue is locked and the selection
pattern is 0.*.
Use command line 'gunzip' to extract the binary.
Don't forget to 'chmod +x' on the resulting file and you should have a
working adxv.
Andrzej
On 11/22/11 3:07 PM, Ian Tickle wrote:
> Rajesh
>
> I use adxv (as well as xemacs, xdsview, imosflm, hklview, ipdisp etc)
> over ssh/Cygwin X11 from Windows XP to a Centos (like RedHat) server
> with no problems at all.
>
> I suspect your xming either just doesn't have the requisite X11 libs
> or somehow they have not gotten installed on your system. Can you try
> Cygwin/X11, it's very easy to install.
>
> Cheers
>
> -- Ian
>
> On 22 November 2011 13:49, Rajesh kumar<[log in to unmask]> wrote:
>> Dear Tim,
>> Yes, I have windows 7 computer and use ccp4 and phenix through xming/putty
>> and I run them over linux lab computer.
>> Sorry if I have confused you all with insufficient information.
>> On the lab linux system, I installed everything you suggested in BASH and
>> it works but not completely.
>> Core manager kind of not interested to look in to it and I dont know much to
>> understand everything you nice people saying here.
>> So instead I used idiffdisp and it opens the image. But wanted adxv to work
>> thats all.
>> Thanks
>> Raj
>>> Date: Tue, 22 Nov 2011 14:41:00 +0100
>>> From: [log in to unmask]
>>> To: [log in to unmask]
>>> CC: [log in to unmask]
>>> Subject: Re: [ccp4bb] adxv
>>>
>>> -----BEGIN PGP SIGNED MESSAGE-----
>>> Hash: SHA1
>>>
>>> Dear Rajesh,
>>>
>>> are you saying that the computer you are sitting in front of is a
>>> windows computer?
>>> Are you sure you have been using CCP4 and phenix through an
>>> ssh-connection and not the respective windows-binaries?
>>>
>>> I am not familiar with windows and the possible existence of
>>> X11-clients, but I would think that most suggestions to you assumed that
>>> your client computer was also a linux-machine.
>>>
>>> Cheers,
>>> Tim
>>>
>>> On 11/22/2011 02:27 PM, Rajesh kumar wrote:
>>>>
>>>> I don't know if I need that installed on my windows computer terminal.On
>>>> the server also I could run adxv. Thought of using other ccp4 utilities.
>>>> Thanks for everyone for the help. I give up.
>>>> Regards,Rajesh
>>>>
>>>>> Date: Mon, 21 Nov 2011 11:36:14 -0500
>>>>> From: [log in to unmask]
>>>>> Subject: Re: [ccp4bb] adxv
>>>>> To: [log in to unmask]
>>>>>
>>>>> yum install lesstif ?
>>>>>
>>>>> but wouldn't the motif stuff be required for the X-server, i.e. your
>>>>> terminal, not for the
>>>>> server running adxv?
>>>>>
>>>>> Rajesh kumar wrote:
>>>>>> Dear Mark,
>>>>>>
>>>>>> $ locate XKeysymDB - didnt come with any thing suggests probably
>>>>>> openmotif lib is not
>>>>>> installed.
>>>>>> I linux server has Fedora and I am using latest version of Adxv so
>>>>>> details on the sbgrid
>>>>>> suggest its same problem.
>>>>>>
>>>>>> So how would I fix this.
>>>>>>
>>>>>> Thanks for your time.
>>>>>>
>>>>>> Regards
>>>>>> Rajesh
>>>>>>
>>>>>>
>>>>>>> Date: Sun, 20 Nov 2011 23:18:32 +0000
>>>>>>> Subject: Re: [ccp4bb] adxv
>>>>>>> From: [log in to unmask]
>>>>>>> To: [log in to unmask]
>>>>>>> CC: [log in to unmask]
>>>>>>>
>>>>>>> Dear Rajesh,
>>>>>>> Are you using the Openmotif library? If so, do you
>>>>>>> have an XKeysymDB file installed?
>>>>>>> In as shell, issue:
>>>>>>> $ locate XKeysymDB
>>>>>>> You may need to symlink it to /usr/X11R6/lib/X11/XKeysymDB if it is
>>>>>>> elsewhere [1].
>>>>>>> I suspect you're not the only one to have seen this [2].
>>>>>>>
>>>>>>> I hope this helps.
>>>>>>>
>>>>>>> Mark
>>>>>>> [1]
>>>>>>
>>>>>> ftp://ftp.parallelgeo.com/SPW_Products/Linux/Current_Release/ReadMe_for_recent_Linux_distributions.txt
>>>>>>> [2] http://sbgrid.org/news/newsletters/2009/06 (search for the
>>>>>>> string "adxv")
>>>>>>>
>>>>>>>
>>>>>>> On 20 November 2011 19:45, Rajesh kumar<[log in to unmask]> wrote:
>>>>>>>>
>>>>>>>> Dear Tim,
>>>>>>>> Thanks. Your suggestion of adding to PATH works and its not
>>>>>>>> completely functional may
>>>>>> be due to the Ximg/ssh or some thing to do with display.
>>>>>>>> All three windows opened but couldn't open any image as it didn't
>>>>>>>> display in the list
>>>>>> of autoload window. Pattern shows *.0.
>>>>>>>>
>>>>>>>> $adxv pin8_1_180.img
>>>>>>>>
>>>>>>>> (standard_in) 1: parse error
>>>>>>>> (standard_in) 1: parse error
>>>>>>>> (standard_in) 1: parse error
>>>>>>>> beam_center x = pixels , mm
>>>>>>>> beam_center y = pixels , mm
>>>>>>>> distance = mm
>>>>>>>> overload = counts
>>>>>>>> pixelsize = 0.172 mm
>>>>>>>> wavelength = Angstroem
>>>>>>>> Adxv Version 1.9.4-beta
>>>>>>>> Copyright (C) 1994-2007 by Andrew Arvai, Area Detector Systems
>>>>>>>> Corporation
>>>>>>>> Using 24-bit TrueColor visual
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> ManagerParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfBeginLine
>>>>>>>> Warning: ... found while parsing ':<Key>osfBeginLine:
>>>>>>>> ManagerGadgetTraverseHome()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfHelp
>>>>>>>> Warning: ... found while parsing ':<Key>osfHelp:
>>>>>>>> ManagerGadgetHelp()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> ManagerParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> PrimitiveParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfHelp
>>>>>>>> Warning: ... found while parsing ':<Key>osfHelp: Help()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> PrimitiveParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfCancel
>>>>>>>> Warning: ... found while parsing ':<Key>osfCancel: MenuEscape()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfSelect
>>>>>>>> Warning: ... found while parsing ':<Key>osfSelect:
>>>>>>>> ArmAndActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> PrimitiveParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: Locale not supported for XmbTextListToTextProperty
>>>>>>>> Warning: Cannot convert XmString to compound text
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfPrimaryPaste
>>>>>>>> Warning: ... found while parsing ':m
>>>>>>>> <Key>osfPrimaryPaste:cut-primary()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> PrimitiveParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> PrimitiveParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfSelect
>>>>>>>> Warning: ... found while parsing ':<Key>osfSelect:
>>>>>>>> ArmAndActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfPrimaryPaste
>>>>>>>> Warning: ... found while parsing ':m
>>>>>>>> <Key>osfPrimaryPaste:cut-primary()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfSelect
>>>>>>>> Warning: ... found while parsing ':<Key>osfSelect:
>>>>>>>> ManagerGadgetSelect()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfSelect
>>>>>>>> Warning: ... found while parsing ':<Key>osfSelect:
>>>>>>>> MenuBarGadgetSelect()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> ManagerParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfHelp
>>>>>>>> Warning: ... found while parsing ':<Key>osfHelp: MenuHelp()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> PrimitiveParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfActivate
>>>>>>>> Warning: ... found while parsing ':<Key>osfActivate:
>>>>>>>> DrawingAreaInput()
>>>>>> ManagerParentActivate()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfUp
>>>>>>>> Warning: ... found while parsing ':<Key>osfUp: DrawingAreaInput()
>>>>>> ManagerGadgetTraverseUp()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfSelect
>>>>>>>> Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfSelect
>>>>>>>> Warning: ... found while parsing ':<Key>osfSelect: KeySelect()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfCancel
>>>>>>>> Warning: ... found while parsing '<Key>osfCancel: MenuEscape()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfBeginLine
>>>>>>>> Warning: ... found while parsing ':s c<Key>osfBeginLine:
>>>>>>>> ListBeginDataExtend()'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: translation table syntax error: Unknown keysym name:
>>>>>>>> osfBeginLine
>>>>>>>> Warning: ... found while parsing ':c<Key>osfBeginLine:
>>>>>>>> ActionGrab(SWTopLine)'
>>>>>>>> Warning: String to TranslationTable conversion encountered errors
>>>>>>>> Warning: Locale not supported for XmbTextListToTextProperty
>>>>>>>> Warning: Cannot convert XmString to compound text
>>>>>>>> Warning: Locale not supported for XmbTextListToTextProperty
>>>>>>>> Warning: Cannot convert XmString to compound text
>>>>>>>> No such file: 0.172
>>>>>>>>
>>>>>>>>> Date: Sat, 19 Nov 2011 22:27:25 +0100
>>>>>>>>> From: [log in to unmask]
>>>>>>>>> To: [log in to unmask]
>>>>>>>>> CC: [log in to unmask]
>>>>>>>>> Subject: Re: [ccp4bb] adxv
>>>>>>>>>
>>>>>>>>> -----BEGIN PGP SIGNED MESSAGE-----
>>>>>>>>> Hash: SHA1
>>>>>>>>>
>>>>>>>>> Dear Raj,
>>>>>>>>>
>>>>>>>>> your first two error messages are because your 'current working
>>>>>>>>> directory' is not part of your bash's PATH variable. As you
>>>>>>>>> login, type
>>>>>>>>> export PATH=$PATH:/full/path/to/your/work/adxv
>>>>>>>>> then run adxv.
>>>>>>>>>
>>>>>>>>> I am not sure whether this will prevent the last error to occur,
>>>>>>>>> but
>>>>>>>>> since you can run other graphical programs there is a fair
>>>>>>>>> chance.
>>>>>>>>>
>>>>>>>>> Cheers,
>>>>>>>>> Tim
>>>>>>>>>
>>>>>>>>> On 11/19/2011 05:53 PM, Rajesh kumar wrote:
>>>>>>>>>>
>>>>>>>>>> Dear All,
>>>>>>>>>>
>>>>>>>>>> I have connected to unix server of the lab through
>>>>>>>>>> ssh/xming/x11. I can run open
>>>>>> phenix and CCP4 GUI.
>>>>>>>>>>
>>>>>>>>>> I am trying to adxv to see images but I am unable to do so.
>>>>>>>>>>
>>>>>>>>>> I have got two files adxv and adxv.i686FC2 sitting in my
>>>>>>>>>> work/adxv/.
>>>>>>>>>>
>>>>>>>>>> when i run adxv in bash
>>>>>>>>>> bash: adxv: command not found
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> when i run ./adxv in bash
>>>>>>>>>> $ ./adxv /home/raj/work/wen/pin8/pin8_1_001.img
>>>>>>>>>> (standard_in) 1: parse error
>>>>>>>>>> (standard_in) 1: parse error
>>>>>>>>>> (standard_in) 1: parse error
>>>>>>>>>> beam_center x = pixels , mm
>>>>>>>>>> beam_center y = pixels , mm
>>>>>>>>>> distance = mm
>>>>>>>>>> overload = counts
>>>>>>>>>> pixelsize = 0.172 mm
>>>>>>>>>> wavelength = Angstroem
>>>>>>>>>>
>>>>>>>>>> ./adxv: line 39: adxv.i686FC2_static: command not found
>>>>>>>>>>
>>>>>>>>>> when i do
>>>>>>>>>> $ ./adxv.i686FC2_static /home/raj/work/wen/pin8/pin8_1_001.img
>>>>>>>>>>
>>>>>>>>>> -X11TransSocketINETConnect() cnat get address for
>>>>>>>>>> loaclhost:6011: name or service
>>>>>> not known
>>>>>>>>>> error: cannot open display
>>>>>>>>>>
>>>>>>>>>> I cant use Nxclient.
>>>>>>>>>>
>>>>>>>>>> Thanks
>>>>>>>>>> Raj
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>> - --
>>>>>>>>> Dr Tim Gruene
>>>>>>>>> Institut fuer anorganische Chemie
>>>>>>>>> Tammannstr. 4
>>>>>>>>> D-37077 Goettingen
>>>>>>>>>
>>>>
>>>
>>> - --
>>> - --
>>> Dr Tim Gruene
>>> Institut fuer anorganische Chemie
>>> Tammannstr. 4
>>> D-37077 Goettingen
>>>
>>> GPG Key ID = A46BEE1A
>>>
>>> -----BEGIN PGP SIGNATURE-----
>>> Version: GnuPG v1.4.10 (GNU/Linux)
>>> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
>>>
>>> iD8DBQFOy6ZnUxlJ7aRr7hoRAkD3AJ0VRmtj8Pn6RGZAX3u/PxKwiciQpQCg8W+U
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>>> =EztH
>>> -----END PGP SIGNATURE-----
>>
--
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