By default it only gives those with rms > mean.
There is an option to ask for all to be output to a separate file..
E
On 11/16/2011 11:48 AM, WENHE ZHONG wrote:
> Dear all,
>
> I am using the Molecular Suporpose tool under Coordinate Utilities list in
> CCP4 to superpose two similar structures. I ticked the "Output all
> distances to a file" option, selected "Superpose specified atoms/residues",
> fit "CA atoms of Residues" to the other one. I wanted to see the RMS
> numbers for each single residue (CA atoms) in the output log file, but I
> fould many residues are missing in the output. I double checked the output
> pdb files, the missing residues fit each other very sensible. The input pdb
> file have been modified with the same start/end residue number and the same
> toally residues number, they are 100% sequence identity as well. Anybody
> knows why some residues are missing in the RMS output list? Thank you.
>
> King regards,
> Wenhe
>
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