Dear FSL experts,
I want to make masks of subcortical grey matter structures in DTI native space,so that i can get mean FA/MD value of each structure.I used flirt to get diff2standard.mat.Diff2standard.mat was converted to standard2diff.mat which was applied to each mask in standard space(MNI152).Finally,I used fslmaths to adjust these masks.Most of these masks ,such as thalumus and caudate,matched the structures.However,caudate masks in many subjects got poor match to the same-name structures and cover part of anterior limb of internal capsule.Can anyone help me out?Thanks!
|