Did you download and install the latest version? Our version is labeled April4th, 2011.
You can additionally try editing the preferences file, dcm2nii.ini, which should be in your home directory to redirect the output.
Looking at your error message, this shouldn't be:
/Users/anna/Desktop/nifti//20100603_150925WIPDiffHR22SENSEs010a001.nii
The path is messed up somewhere, after /Users/anna/Desktop/nifti/.
________________________________________
From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of Anna Matejko [[log in to unmask]]
Sent: Tuesday, October 25, 2011 1:56 PM
To: [log in to unmask]
Subject: Re: [FSL] Philips Par/Rec Files and Gradient tables
Hi Christine,
I attempted this, but I still seem to get the error message even after re-installing mricron (see precise error message below).
Any alternative suggestions?
Thanks again for the help!
Anna
idholloway:/ anna$ sudo ../Applications/mricronmac/dcm2nii -o ~/Desktop/nifti ~/Desktop/jhu/1111/1111_1.par
Chris Rorden's dcm2nii :: April 4 2011
reading preferences file /Users/anna/.dcm2nii/dcm2nii.ini
input name /Users/anna/Desktop/jhu/1111/1111_1.par
input REC name /Users/anna/Desktop/jhu/1111/1111_1.rec
PAR v4.2 not yet fully supported
Warning: note that this image has more than 4 dimensions (multiple Cardiac/Echo/Type/Sequence)
/Users/anna/Desktop/jhu/1111/1111_1.rec --> /Users/anna/Desktop/nifti//20100603_150925WIPDiffHR22SENSEs010a001.nii
Changing subformat of /Users/anna/Desktop/nifti//20100603_150925WIPDiffHR22SENSEs010a001.nii
GZip...f20100603_150925WIPDiffHR22SENSEs010a001.nii.gz
input name /Users/anna/Desktop/jhu/1111/1111_2.par
input REC name /Users/anna/Desktop/jhu/1111/1111_2.rec
PAR v4.2 not yet fully supported
Warning: note that this image has more than 4 dimensions (multiple Cardiac/Echo/Type/Sequence)
/Users/anna/Desktop/jhu/1111/1111_2.rec --> /Users/anna/Desktop/nifti//20100603_150925WIPDiffHR22SENSEs011a001.nii
Changing subformat of /Users/anna/Desktop/nifti//20100603_150925WIPDiffHR22SENSEs011a001.nii
GZip...f20100603_150925WIPDiffHR22SENSEs011a001.nii.gz
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