Hi Christian,
following your reply, I have some more questions on how to implement melodic. I have preprocessed all our data using feat (without the MELODIC ICA data exploration option).
when I run the melodic command, do I need to run it for each group separately, ie control one melodic run, then one for patients, or would I give all the subjects as input?
you mentioned including confound variables for the different acquisition protocols - I can't figure out where to put them, I've tried to set up a higher level feat but the option of including confounds is only at the 1st level.
Finally, a general question: all the data that I feed into melodic command line need always be preprocessed and in standard space (ie applywarp applied)?
Thanks very much in advance for your help.
Best wishes,
Torsten
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