Mine reads:
/usr/local/ccp4/6.2.0/ccp4-6.2.0/share/python:/usr/local/ccpnmr/ccpnmr1.0/python
That should work, right? Where else can I look, for the failing
import? This is a lettuce-fresh install, pulled straight off web and
installed with all defaults.
Cheers
phx.
On 18/10/2011 08:38, Tim Gruene wrote:
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> Hi Frank,
>
> it may not be the python binary itself but the PYTHONPATH which is
> incorrectly set. After initialising ccp4, mine reads
> tg@slartibartfast:~$ echo $PYTHONPATH
> /xtal/Suites/CCP4/ccp4-6.2.0/share/python:
> which is modified around line 231 in $CBIN/include/ccp4.setup
>
> My python binary is /usr/bin/python, and I have used buccaneer without
> errors.
>
> Tim
>
>
>
> On 10/17/2011 09:30 PM, Frank von Delft wrote:
>> Hi, we got around to switching to ccp4 version 6.2.0, but now buccaneer
>> fails from the GUI. Below is what shows up if you view the com file
>> before execution; and below that the logfile.
>>
>> Seems to me it's using the wrong python executable; the first one on my
>> path is certainly nothing to do with ccp4, so now wonder it can't import.
>>
>> Shouldn't python be invoked explicitly with its full path? Where can I
>> set this? (Mind you, setting it in the Run&View didn't work.)
>> Cheers
>> phx
>>
>>
>>
>>
>> *Run&View Com File: *
>> python -u /usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline -stdin
>>
>>
>> *Logfile*
>> #CCP4I VERSION CCP4Interface 2.1.0
>> #CCP4I SCRIPT LOG buccaneer_pipeline
>> #CCP4I DATE 17 Oct 2011 18:45:20
>> #CCP4I USER loretta
>> #CCP4I PROJECT PROJECT
>> #CCP4I JOB_ID 13
>> #CCP4I SCRATCH /tmp/loretta
>> #CCP4I HOSTNAME hestia.sgc.ox.ac.uk
>> #CCP4I PID 13684
>>
>> ***************************************************************************
>> * Information from CCP4Interface script
>> ***************************************************************************
>> The program run with command: python -u
>> /usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline -stdin
>> has failed with error message
>> Traceback (most recent call last):
>> File "/usr/local/ccp4/6.2.0/ccp4-6.2.0/bin/buccaneer_pipeline", line
>> 3, in<module>
>> from CCP4pipeline import Control
>> ImportError: No module named CCP4pipeline
>> ***************************************************************************
>>
>>
> - --
> - --
> Dr Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
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