Hi Jake,
You can do:
fslmaths image -Zmean mip
to get a mean projection along the z-axis (giving an
axial slice in the template orientation). Or you can
get the other axes using -Xmean and -Ymean.
Hope that helps.
All the best,
Mark
On 7 Sep 2011, at 16:29, Jake wrote:
> Dear FSLers,
>
> I was searching the message boards to see if there is a tool that can create a mean intensity projection map, but was unable to find a reference to one. Is there one that works in FSL?
>
>
> Thanks in advance,
>
> Jake
>
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