Hi Supreet,
I am not sure what you mean by "blocks", in the fdt pipeline data input images are expected to be 4D, where the 4th dimension corresponds to a different diffusion-sensitising direction. Regarding tractography in DTI studio, the questions should be addressed to the DTIstudio mail-list?
Cheers,
Stam
On 30 Sep 2011, at 09:37, Supreet kaur wrote:
> Hello all DTI experts,
> I am stuck at DTI problem as I am progessing DTI images for Trachtography.
> 1) I have 17 blocks and 44 image sets, making it 748 dicom total images.
> 2) I need to convert those dicom files to FSL nifti format for image processing in FSL. I did that using the MRI convert which converts my
> dicom files into FSL nifti.
> 3) And then I transfered (copies and pasted my nifti file) into the FSL for BET and eddy-motion correction. Everything seemed to work fine in the FSL.
> 4) Then I tranfered my final processed file in the windows for DTI fiber tracking for Trachtography in DTI studio.
> Surprising I found out that my final images are only 44 images with 1 block of image set, when I viewed them in DTI studio.
> I was really disapponited that where did the rest of my images go after processing ni FSL.
>
> I will really appreciate your feedback and help, and I am struggling hard to figure out this problem..
>
>
> Sincerely,
>
> Supreet kaur, BME engineer
> Nationwide Childrens Hospital,
> Columbus, OH
> (614)355-3509
>
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