Hi Florian,
May be you can try the software from CLC bio. The full version can be
used as trial for four weeks and the free limited one forever! I think
you can do most of your things with the limited one. The link to
download the software is www.clcbio.com/index.php?id=532.
Regards,
Mahmudul Hasan
PhD Student
Dept of Biochemistry and Structural Biology
Center for Molecular Protein Science
PO Box 124
221 00 Lund
Sweden
On Tue, Sep 27, 2011 at 5:42 PM, Florian Schmitzberger
<[log in to unmask]> wrote:
> Dear All,
> What type of software are people commonly using these days for
> vector/plasmid map editing, making/visualizing vector maps, and aligning
> (small to medium size) DNA sequencing data? Preferably, it should not be too
> expensive and be able to write text files, readable by other programs.
> I am familiar with VectorNTI, which is great for vector visualization and
> editing; but I find it somewhat expensive. Sequencher seems good to quickly
> align DNA sequences (such as from DNA sequencing) with templates, but is not
> free. I have been using ApE for while for alignments, but aligning many
> sequences is more cumbersome than in Sequencher; I have not tested if
> Sequencher is good at visualizing and editing plasmid maps.
> Ideally, I would like to have a single program for both purposes (vector
> editing and DNA sequence comparison). Does something like that exist? What
> are the alternatives to above programs?
> Thank you in advance.
> Florian
> -----------------------------------------------------------
> Florian Schmitzberger, PhD
> Biological Chemistry and Molecular Pharmacology
> Harvard Medical School
> 250 Longwood Avenue, Seeley G. Mudd 123
> Boston, MA 02115, US
> Tel: 001 617 432 5603
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