Thanks for the suggestion, Jonathan.
Another minor issue. As you probably know, the template creation takes a long time to run. DO you think it is absolutely necessary to make the template based on all subjects? I am just imaging the senario, where an ongoing study collected data on 20 subjects (10 in each group), and plans to collected some more. Is it justifiable to make the template based on these 20 and them applied to the last 10, since they are collected based on the same sequence.
Another related problem I have was on "New segment". When I used it with brains with sever atrophy, it inflate gray matter in the c1* images (filled in gray matter where it should be atrophied), whereas "segment" produce reasonable segmentation. I wonder whether anyone here had similar experience.
Best,
Christine
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