Hey Chris,
On Mon, Aug 22, 2011 at 12:40:01PM +0100, Chris Filo Gorgolewski wrote:
> Hi,
> Is there an interface to the atlases included in FSL? I've go many MNI
> coordinates and would like to get labels and probabilities from a few
> atlases available in FSL. The manual way to do it is to use FSLView
> and its atlas tool, but I bet there is more efficient way to do it.
> Any ideas?
michael@meiner ~ % atlasquery
***************************************************
The following COMPULSORY options have not been set:
-a,--atlas name of atlas to use
***************************************************
Part of FSL (build 416)
atlasquery (version 1.0)
Copyright(c) 2005, University of Oxford
Dave Flitney
Usage:
atlasquery [-a "<atlasname>"] [-m <maskimage>] [-c <X>,<Y>,<Z>]
Compulsory arguments (You MUST set one or more of):
-a,--atlas name of atlas to use
Optional arguments (You may optionally specify one or more of):
-V,--verbose switch on diagnostic messages
-h,--help display this message
-m,--mask a mask image to use during structural lookups
-c
--dumpatlases Dump a list of the available atlases
--
Michael Hanke
http://mih.voxindeserto.de
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