Yuri wrote:
> Hello Everyone,
> A little off topic but, what is a good way to show (publication
> quality) multiple sequence alignment?
> I am trying to show conserved regions in related proteins from
> different organisms.
> Thank you
> --
> Yuri Pompeu
>
or clustalw, e.g.
http://npsa-pbil.ibcp.fr/cgi-bin/align_clustalw.pl
You can save the HTML to your disk and edit it with mozilla (seamonkey),
print to pdf, or grab screenshot for a gif.
Color is limited to characters not background, which in my opinion looks
better anyway. One could use photoshop on the gif to color background -
but then maybe easier to use ESPript
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