On 30/08/11 22:19, Mathias Warnke wrote:
> Hi FSL forum.
>
> Can anyone help me determining the amount of activated voxels contained within a userdefined ROI?
> I have used some commands like --volume and fslmaths but I'm afraid it returns the whole voxels inside
> a ROI and not only the activated voxels I want to assess (see the attached image). I.e. these commands
> output the anatomical scan plus the activated voxels.
>
> Thanks in advanced.
>
> Best regards.
Hi
Try: fslstats your_funcdata -k your_roi -V
I think that's doing what you want.
good luck,
wolf
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