Hi,
As BET deals with 3D inputs normally, I think this is a small bug
that no-one has worried about before. I'll look into it and try and
get a fix soon.
All the best,
Mark
On 16 Aug 2011, at 00:21, Jeff Eriksen wrote:
> Mark,
>
> I got this to work with pixdim4 and toffset (setting each to 8 for a particular example), but then when I process the nii file that has the header set the way I want it, BET writes over the values and sets them back to their defaults (1 and 0) in the output brain.nii. Is this a feature or a bug, and can it be prevented? I hate to have to experiment with this using the other FSL tools.
>
> -Jeff
>
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