Hi,
I have a quick question about the slice direction (-d) option of slicetimer. Does this refer to the axis in voxel space, or in physical ("RAS") space (after applying the q-form transformation)? In other words, if I have an image in, say, LSA orientation with slices acquired along the inferior-superior axis (physical z-dimension, but second dimension of voxel coordinates), will slicetimer use the correct, inferior-superior axis by default? Thanks,
Ben
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