Dear experts,
I am trying to use fslmeants to extract time series data for a seed-based resting-state fMRI analysis.
I would like to define the "seed" using some MNI coordinates published in the literatures.
However, the fslmeants function seems to read the input coordinates (with -c option) as "voxel coordinates but not the MNI.
Any suggestions on how to convert the coordinates?
I am doing
(1) Pre-processing: bet, motion correction, band-pass filtering, registration: subject's 4D EPI -> subject's T1 -> MNI 1mm brain.
(2) generate a 9 columns text file for confound EVs (6 parameters motion, WM, CSF, and global)
(3) extract time series from target regions (based on MNI coordinates) for FEAT analysis
Those these steps sound correct?
Thanks for any advices in advance.
Monica
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