Hi,
So what happens if you apply the non-inverse transform (I2std.mat)
to the high res image (with a standard space image as the reference)?
Does it end up correctly in standard space?
Also, it might be helpful to show us the "analogous code" used in the terminal.
All the best,
Mark
On 11 Jul 2011, at 22:23, SUBSCRIBE FSL lukasz priba wrote:
> Hi Mark,
>
> I used ApplyXFM function (in GUI): my mask is the input volume (already in MNI space), the reference volume is the high res T1 MR image (native space) and I2std_inv.mat as a transformation matrix.
>
> Once I ran it for the first time (and got satisfactory results on few axial images) I used the analogous code that FSL prints in the terminal to avoid unnecessary GUI usage.
>
> hope this helps,
> Lukasz
>
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