Dear Michele,
You need to run FIRST to segment the brainstem or
cerebellum. Documentation for how to run these is available
on the website and via the FSL course practicals.
All the best,
Mark
On 5 Jul 2011, at 14:35, Michele Placci wrote:
> How can I get this mask, for example, the mask of the cerebellum or brainstem?
>
> thank you.
>
>
>
> 2011/7/5 Eugene Duff <[log in to unmask]>
> Hi,
>
> Typing fslstats will give you fairly detailed information on its usage.
>
> All you need is the mask file for the ROI, then type: fslstats ROI.nii.gz -V
>
> Cheers,
>
> Eugene
>
> --
>
> Eugene Duff, Phd
> Analysis Group, Centre for Functional MRI of the Brain (FMRIB)
> Nuffield Department of Clinical Neurosciences
> John Radcliffe Hospital
> University of Oxford, OX3 9DU
>
> Ph: +44 (0) 1865 222 523
>
> --
>
>
>
> On 5 July 2011 13:52, Michele Placci <[log in to unmask]> wrote:
> Can you tell me please all the steps starting from the beginning,
> because we do not find help for this command.
>
>
>
>
> 2011/7/5 Eugene Duff <[log in to unmask]>
> Hi Michele -
>
> fslstats with the -V option should do it..
>
> Eugene
>
>
>
> On 5 July 2011 11:50, Michele Placci <[log in to unmask]> wrote:
> Dear Experts,
>
> can you tell me please how to calculate, with FSL, the volume of a particular cerebral ROI,
> for example the volume of the cerebellum from a 3D T1-weighted MRI?
>
> Thanks in advance.
> Michele.
>
>
>
>
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