Hello,
I have been trying to convert .nii files from MNI space to diffusion native space (for tractography purposes) using tbss_deproject.
These files I want to convert are spheres in various brain regions. I have them all resized to the 1mm MNI brain and they are binarised. For all brain regions BAR cerebellar ones, the deprojection works fine, and I can visualise the deprojected spheres as an overlay on each person's diffusion native space image (all are in the correct location etc). However, I have two cerebellar spheres and neither will deproject. I am not getting any error messages, there is simply no sphere showing up on the native space images when I try to view the output from tbss_deproject for the cerebellar spheres in fslview.
I would be really grateful for any advice. I have tried re-running the entire TBSS analysis, but it has made no difference.
Many thanks,
Jane
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