Dear SPMers,
1. When I coregister the data manually in GUI (using prepare function) and load the coregistered data in source reconstruction window, my source reconstruction results defer hugely from when I coregister the data inside the source reconstruction window. Do you have any idea why? Can it be because I am not asked about any template in former case? If so, how can I assign a template to my data in former case. The problem is I do not know which reconstruction I should pick as the correct one.
I have attached the figures from the two different cases here.
2. Can you also explain what the colorful window at the bottom of "induced source reconstructed" figure is? I thought it should be a hanning window (my data is epoched and I choose a 0-120Hz frequency window and the whole time window).
Best,
Pegah
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