Hi,
yeah, I noticed, too. I couldn't tell, however! That's something I am
following up at the moment, or rather when I am back at work. I'll
post again as soon as I have news.
Thanks,
Cornelius
On Sat, Jun 11, 2011 at 8:51 AM, Stephen Smith <[log in to unmask]> wrote:
> Hi Cornelius,
> OK - there's something weird about the second command - why is the full path
> to the mask appended twice?
> Cheers.
>
>
> On 10 Jun 2011, at 16:47, Cornelius Werner wrote:
>
> Hi,
>
> actually, I did (see attachment, renamed to testmask). It looks ok to
> me, the spot with intensity 100 superimposed onto the MNI152 brain
> looks like it is situated where I want it to be. However, the
> coordinates given by Fslview are not the same as the ones I supplied
> with the command.
> Thanks and best regards,
> Cornelius
>
> On Fri, Jun 10, 2011 at 5:31 PM, Stephen Smith <[log in to unmask]> wrote:
>
> Hi - have you tried running the very first command in the log by hand and
>
> checking the output in FSLView?
>
> Cheers.
>
> On 10 Jun 2011, at 16:13, Cornelius Werner wrote:
>
> Hello all,
>
> I seem to be unable to query my 2nd level FEAT data with Featquery
>
> when the registration has been done with FNIRT. Running Featquery on
>
> basically the same dataset that has been registered to MNI space using
>
> FLIRT runs fine, however! There also seems to be a problem with path
>
> variables. The log for one of the subjects is attached. Is there
>
> anything I can do?
>
> Thanks for any help,
>
> Cornelius
>
> --
>
> Dr. med. Cornelius J. Werner
>
> Department of Neurology
>
> RWTH Aachen University
>
> Pauwelsstr. 30
>
> 52074 Aachen
>
> Germany
>
> <report.log>
>
> ---------------------------------------------------------------------------
>
> Stephen M. Smith, Professor of Biomedical Engineering
>
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
>
> +44 (0) 1865 222726 (fax 222717)
>
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
>
> ---------------------------------------------------------------------------
>
>
>
>
>
>
>
> --
> Dr. med. Cornelius J. Werner
> Department of Neurology
> RWTH Aachen University
> Pauwelsstr. 30
> 52074 Aachen
> Germany
> <testmask.nii.gz>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
>
>
>
--
Dr. med. Cornelius J. Werner
Department of Neurology
RWTH Aachen University
Pauwelsstr. 30
52074 Aachen
Germany
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