Hi there,
I'm trying out the vertex analysis function but cannot produce the final .vtk file.
I've done the segmentation and concatenated the bvars files and produced the design matrix, seemingly without problems.
I then run the 'first_utils command from my 'test' directory (which contains my bvars files and my con0_dis1.mat file):
first_utils --vertexAnalysis --usebvars -i con_to_dis_L_Hipp.bvars -d con0_dis1.mat -o shape_analysis/con0_dis1_L_Hipp --useReconNative --useRigidAlign -v >& shape_analysis/con0_dis1_L_Hipp_output.txt
In my shape_analysis file, the only output is the .txt file. I don't get an error in my terminal when I run the above command but the contents of the text file is:
read model
Cannot open file.
Cannot open file.
Any advice greatly appreciated,
rgds,
Duncan.
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