Hi Alle,
Have you added the correct queue names to SGE? You can test this using fsl_sub directly, e.g.
fsl_sub -q veryshort.q sleep 5
hth
Christian
On 25 May 2011, at 11:32, Alle Meije Wink wrote:
> Dear all,
>
> I'm trying to run a dual regression analysis on an SGE cluster, after checking that SGE_ROOT is set and the mode is set to 'SGE' in fsl_sub.
>
> The output that the dual_regression script gives in the terminal window is:
>
> creating common mask
> Unable to run job: Job was rejected because job requests unknown queue "veryshort.q".
> Exiting.
> Unable to run job: denied: "5" is not a valid object name (cannot start with a digit)
> Job was rejected because job requests unknown queue "long.q".
> Exiting.
> doing the dual regressions
> Unable to run job: denied: "30" is not a valid object name (cannot start with a digit)
> Job was rejected because job requests unknown queue "long.q".
> Exiting.
> sorting maps and running randomise
> Unable to run job: denied: "60" is not a valid object name (cannot start with a digit)
> Job was rejected because job requests unknown queue "long.q".
> Exiting.
>
> So it looks like the fsl_sub submits jobs to the queue manager with a syntax that the queue manager does not understand?
> Has anyone else had this problem?
>
> Best wishes
> Alle Meije Wink
>
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